Backup data from MT4.1/PP1.1 can't enter MT4.2rc3/PP1.11 by restore function giving out an error,
Restoring Movable Type
Uploaded file was backed up from Movable Type but the different schema version (4.0036) from the one in this system (4.0066). It is not safe to restore the file to this version of Movable Type. at lib/MT/BackupRestore/BackupFileHandler.pm line 56. at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/XML/LibXML/SAX.pm line 64 at lib/MT/BackupRestore.pm line 364
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An error occurred during the restore process: Uploaded file was backed up from Movable Type but the different schema version (4.0036) from the one in this system (4.0066). It is not safe to restore the file to this version of Movable Type. at lib/MT/BackupRestore/BackupFileHandler.pm line 56. at /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi/XML/LibXML/SAX.pm line 64 at lib/MT/BackupRestore.pm line 364 Please check activity log for more details.
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It seems that something from both of MT4.2 and hosting side should be reconfigured. Any idea to fix this problem?

I've seen this problem with backup in other variations as well. I think the backup feature is intended to only be used within the same version of Movable Type (sorry to state the obvious). For future reference, backing up the database is generally the far safer bet. If you're using MySQL, this'll help you avoid this issue:
mysqldump -u myusername -p mydatabasename > myblog.sql